ggplot2 - Linear regression different using R plot() and qplot() -

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if create scatterplot using plot() lm(x~y) on data intercept @ 500 , when observe qplot on same data stat_smooth(method=lm), intercept @ 1000 on y axis. although slope looks visually similar on simple plot(). hope makes sense. cannot understand why difference. full functions given below. appreciated.

plot():

plot (my[[12]],my[[8]]) abline(lm(my[[12]]~my[[8]]),col="red")

qplot():

mygg<-qplot(x=my[[12]],y=my[[8]])                        # pretty scatterplot mygg<-mygg + stat_smooth(fullrange=true,method="lm")

it seems me variables in regressions not correspond. in lm variable my[[12]] dependent, in qplot variant independent one. using lm(my[[8]]~my[[12]] should make equivalent.

it common mistake mix variables when using plot , lm. note axis right, order of variables changes in lm compared plot.

x <- rnorm(100) y <- rnorm(100) plot(x,y) abline(lm(y ~x))

to make less confusing might use formula interface in plot well.

plot(y ~ x) abline(lm(y ~x))

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